You can honestly blame Funimation for the fall of Toonami. They kept asking ridiculously high prices of Cartoon Network, which was in the middle of an executive shift at the time, which pushed the newer guys away. In the end, Cartoon Network asked for a higher cut of the money from Funimation's merchandise (which was fair, because Cartoon Network was the only network airing their shows), due to the low rates they were getting from Naruto (which was in the infamous 50+ episodes of filler point). Funimation refused and the relationship was poisoned.
It's also why William's Street is only allowed to show Anime one night a week now, and why the only Funimation show is Fullmetal Alchemist: Brotherhood. I think everything else is Aniplex.